#!/bin/bash
#SBATCH -p short
#SBATCH -t 1:00:00
#SBATCH --mem 1G
#SBATCH -e MakeTrackLinks.%j.err
#SBATCH -o 062023_ChimpHumanCnT_tracklinks.txt
for sample in .bw
do
echo 'track type=bigWig name="'$sample'" description="'$sample'" priority=17 visibility=full autoScale=off maxHeightPixels=10:25:70 viewLimits=0:16 color=0,0,0 smoothingWindow=off bigDataUrl="http://neuroduo.hms.harvard.edu/bigWig/Ava/221012_ChimpHuman/'$sample'"'

done

# Make sure to adjust type=bigBed or bigWig as needed.
# to run this script on all specified linked files while in the /n/www/neuroduo.hms.harvard.edu/docroot/bigWig/Gabriella directory, use the following command:
# sbatch /n/groups/neuroduo/gabriella/scripts/MakeTrackLinks.run